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\n\n $\"Thoth$ \n\n# Thoth\n\n**Agentic systematic literature reviews — with every citation checked against the source.**\n\n*Named for Thoth, ancient Egypt's ibis-headed god of writing and scribes.*\n\n[![Live demo](https://img.shields.io/badge/▶_live_demo-thoth--slr.vercel.app-1E3A8A?style=flat-square)](https://thoth-slr.vercel.app)\n[![Public evals](https://img.shields.io/badge/evals-public-C9A961?style=flat-square)](https://thoth-slr.vercel.app/evals)\n[![MCP Registry](https://img.shields.io/badge/MCP-registered-orange?style=flat-square)](https://registry.modelcontextprotocol.io/v0/servers?search=io.github.ahmedEid1/thoth)\n[![Tests](https://img.shields.io/badge/tests-676%20passing-success?style=flat-square)](docs/architecture.md#tests--verification)\n[![App release](https://img.shields.io/badge/app%20release-v2.0.0-informational?style=flat-square)](CHANGELOG.md)\n[![Deploy cost](https://img.shields.io/badge/deploy-%240%2Fmo-brightgreen?style=flat-square)](docs/self-host/oracle-cloud-quickstart.md)\n[![License: MIT](https://img.shields.io/badge/license-MIT-black?style=flat-square)](LICENSE)\n\n**[Try the live demo](https://thoth-slr.vercel.app)** · **[See a sample review](https://thoth-slr.vercel.app/showcase)** · **[Public eval dashboard](https://thoth-slr.vercel.app/evals)** · **[Connect via MCP](#-connect-it-to-your-ai-assistant)**\n\n $\"Browsing$ \n\n

\n\n---\n\n## What is Thoth?\n\nSystematic literature reviews are slow to write — and when you ask an LLM to write\none, it confidently invents citations and statistics that aren't in any paper.\n\n**Thoth does both halves and checks its own work.** Give it a research question and\nit discovers relevant papers, reads them, drafts an evidence-grounded review — then\nruns a verification pass (`cite_check`) that compares **every cited claim against the\nsource paper** and flags anything unsupported *before you read the draft*. The result\nis a review with a critic score, a citation-faithfulness percentage, and a per-claim\naudit you can trust.\n\nIt runs as a polished web app, a public eval dashboard, and an authenticated MCP\nserver your AI assistant can call directly.\n\n## See it work\n\n**Claude.ai catches 6 fabricated citations in a real draft — using Thoth's audit:**\n\n

\n $\"Claude.ai$ \n

\n\n> Connected to Thoth via the [official MCP Registry](https://registry.modelcontextprotocol.io/v0/servers?search=io.github.ahmedEid1/thoth), Claude calls `get_citation_audit` on **one deliberately-weak review** (faithfulness 0.13 for that single review) and identifies all 6 unsupported claims — every one citing the same paper, with invented percentages that aren't in the source. This is `cite_check` doing its job: it's a single-review audit sample, not the golden-set aggregate (see [`/evals`](https://thoth-slr.vercel.app/evals)).\n\n**Every claim, scored against its source** — the `/showcase` review (no login needed). The figures on this card (critic 4.2/5, faithfulness 75%, 8/8 citations checked, 2 unsupported) are **this one review's** scores — a worked example, not the aggregate:\n\n

\n $\"A$ \n

\n\n**Evaluated in public** — [`/evals`](https://thoth-slr.vercel.app/evals) tracks citation recall / precision / faithfulness / coverage over an 18-question versioned golden set (7 of 18 populated at this commit), regenerated in CI and published with the last-run date, so a regression is a public, falsifiable signal:\n\n

\n $\"Thoth's$ \n

\n\n**You approve every step** — three human-in-the-loop gates (review plan → review discovered papers → approve included papers); nothing runs unattended:\n\n

\n $\"Thoth's$ \n

\n\n## Key features\n\n- **🔎 `cite_check` — verifiable citations.** Every `[paper_id]` in the draft is\n scored against the cited paper and labelled supported / unsupported / unclear,\n so the LLM can't quietly hallucinate a citation. On the public golden set, the\n citations it *does* surface are accurate — **citation precision 97%, recall 74%**\n — and the verdict report is published per claim, not summarised away. This is the\n core differentiator: the citations are measured, not asserted.\n- **🌐 Outbound web search (v2 — under active evaluation).** An outbound\n `discoverer → fetcher → screener` path is wired across **OpenAlex**, **arXiv**, and\n **Exa**: it fetches open-access PDFs, OCRs them, and screens each against your plan,\n so you can run uploaded-only, hybrid, or fully autonomous discovery. The discovery\n and screening axes are **v2 and still being calibrated** — they're tracked openly on\n [`/evals`](https://thoth-slr.vercel.app/evals) (both currently at 0%) rather than\n shipped as a silent claim.\n- **🔌 Authenticated, registered MCP server.** OAuth 2.1 + PKCE + Dynamic Client\n Registration via Clerk, SHA-256 audit logging, rate limits — listed in the\n [official MCP Registry](https://registry.modelcontextprotocol.io/v0/servers?search=io.github.ahmedEid1/thoth).\n Most public MCP servers ship with no auth; this one doesn't.\n- **📊 Public eval dashboard.** Recall / precision / faithfulness / coverage over a\n versioned golden set, regenerated in CI and stamped with the last-run date, rendered at\n [`/evals`](https://thoth-slr.vercel.app/evals) — an eval regression is a *public*\n signal, not a hidden one.\n- **💸 6 LLM providers, $0/mo by default.** Swap providers with one env var; the Mistral\n free tier runs the whole thing, and the entire stack deploys on free tiers for\n **$0/mo**.\n\n## 🚀 Quickstart\n\n**Try it now (nothing to install):**\n- **[Open the live demo →](https://thoth-slr.vercel.app)** and build a review, or\n **[browse a finished one →](https://thoth-slr.vercel.app/showcase)**.\n\n**Connect it to your AI assistant** — paste this into claude.ai (Pro/Max), Claude\nDesktop, Cursor, or any MCP client (OAuth runs in your browser; no token to copy):\n\n```\nhttps://thoth-slr.vercel.app/api/mcp/mcp\n```\n\n

Read-only MCP tools (scoped to your account)

\n\n- `list_reviews` — your reviews with critic + faithfulness scores\n- `get_review_draft` — the markdown draft of a completed review\n- `get_citation_audit` — the per-claim cite_check verdict report\n- `list_discovered_papers` *(v2)* — papers the discoverer surfaced, with fetch + screening status\n- `get_search_queries` *(v2)* — the queries the discoverer generated + per-provider errors\n\nFull reference: [`docs/mcp/tools.md`](https://github.com/ahmedEid1/thoth/blob/master/docs/mcp/tools.md) · auth + audit model: [`docs/mcp/security.md`](https://github.com/ahmedEid1/thoth/blob/master/docs/mcp/security.md)\n

\n\n

\n $\"Adding$ \n
Adding Thoth as a custom connector in claude.ai — OAuth runs in your browser (Clerk + DCR), no token to copy.\n

\n\n**Run it locally:**\n\n```bash\ngit clone https://github.com/ahmedEid1/thoth.git && cd thoth\ncp .env.example .env # Clerk + Trigger.dev keys + MISTRAL_API_KEY\ndocker compose up -d # postgres, minio, langfuse\npnpm install && pnpm prisma migrate dev\npnpm dev # Next.js on :3000\npnpm dev:trigger # Trigger.dev worker (separate terminal)\n```\n\nFull setup, the agent pipeline, and the v2 flow: **[docs/architecture.md](https://github.com/ahmedEid1/thoth/blob/master/docs/architecture.md)**.\n\n## Proof\n\n| | |\n|---|---|\n| **Live app** | [thoth-slr.vercel.app](https://thoth-slr.vercel.app) (Clerk sign-in) · sample review at [`/showcase`](https://thoth-slr.vercel.app/showcase) |\n| **Public evals** | [`/evals`](https://thoth-slr.vercel.app/evals) — **citation precision 97%, recall 74%** on a versioned 18-question golden set (7 of 18 populated at this commit; faithfulness 38% / coverage 32% tracked in the open as the set fills out; discovery/screening v2 under calibration). Regenerated in CI, published with the last-run date — a regression is a public signal. |\n| **MCP Registry** | [`io.github.ahmedEid1/thoth`](https://registry.modelcontextprotocol.io/v0/servers?search=io.github.ahmedEid1/thoth) — `status: active` |\n| **Tests** | 676 unit/integration + 22 live e2e against the deployed instance (MCP transport, real-browser, authenticated walkthroughs, full agent runs) — all green; tsc + lint clean |\n| **Audit log** | Every MCP call recorded with a SHA-256 input hash; no raw input stored |\n| **Deploy cost** | $0/mo — Vercel + Neon + Cloudflare R2 + Langfuse + Trigger.dev, all free tiers ([self-host option](https://github.com/ahmedEid1/thoth/blob/master/docs/self-host/oracle-cloud-quickstart.md)) |\n\n## For engineers\n\nThoth is a **LangGraph** `StateGraph` driven by a **Trigger.dev** worker, with durable\nhuman-in-the-loop gates, a per-run cost cap, and exactly-once gate delivery. Next.js 16\n+ TypeScript (strict), Postgres + Prisma, Clerk auth (web + OAuth 2.1 for MCP),\nS3-compatible storage, Mistral OCR, Langfuse tracing.\n\n- **[Architecture](https://github.com/ahmedEid1/thoth/blob/master/docs/architecture.md)** — the agent pipeline, full stack, v2 flow, tests\n- **[LLM providers](https://github.com/ahmedEid1/thoth/blob/master/docs/llm-providers.md)** — the 6-provider matrix + resilience knobs\n- **[MCP tools](https://github.com/ahmedEid1/thoth/blob/master/docs/mcp/tools.md)** · **[MCP security](https://github.com/ahmedEid1/thoth/blob/master/docs/mcp/security.md)**\n- **[Security & privacy](https://github.com/ahmedEid1/thoth/blob/master/docs/security-and-privacy.md)** — data inventory, jurisdictions, deletion paths\n- **[Self-host](https://github.com/ahmedEid1/thoth/blob/master/docs/self-host/oracle-cloud-quickstart.md)** — one VM on Oracle Cloud Always Free\n- **[Changelog](https://github.com/ahmedEid1/thoth/blob/master/CHANGELOG.md)** · **[Releasing](https://github.com/ahmedEid1/thoth/blob/master/RELEASING.md)**\n\n## Credits\n\nIbis icon by [Delapouite](https://delapouite.com/) under [CC BY 3.0](https://creativecommons.org/licenses/by/3.0/), via [game-icons.net](https://game-icons.net/1x1/delapouite/ibis.html).\n\n## License\n\n[MIT](https://github.com/ahmedEid1/thoth/blob/master/LICENSE) © 2026 Ahmed Hobeishy\n","changelogMarkdown","videoKey","requiredSecretsJson","publishedAt","priceCents","trialDays",0,"upstream",{"_111":112,"_113":114,"_115":116,"_117":118,"_119":120,"_121":122},"requiredSecrets",[],"tags",[98,99,100,101,102,103,104,105,106,107,108,109,110],"assets",[],"stats",{"_96":85,"_97":85},"ratingAvg","reviewCount","agentic-ai","ai-agents","cite-check","clerk","hallucination-detection","langgraph","llm","nextjs","oauth2","prisma","systematic-literature-review","trigger-dev","typescript","topics",[98,99,100,101,102,103,104,123,124,105,106,107,108,109,110],"license","MIT","language","TypeScript","registryName","io.github.ahmedEid1/thoth","homepage","https://thoth-slr.vercel.app","packages",[],"mcp","mcp-server","ENV",{"_127":128,"_129":130,"_131":132},"ENVIRONMENT","production","TURNSTILE_SITE_KEY","0x4AAAAAAB8-rEI2gNDf_QhU","SENTRY_DSN","https://45fd1229f78089d5c3ee78be128030e1@o4510583261757440.ingest.de.sentry.io/4510584253448272"]