ENCODE Toolkit

Local

@ammawla24PythonAGPL-3.0Updated 1mo ago

20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines

Runs locally over stdio

This server isn't hosted — your MCP client launches it from a package registry. Use one of the commands below, or drop the config into your client (e.g. Claude Desktop).

npmencode-toolkitv0.3.0-beta.5

Run

npx -y encode-toolkit

MCP client config

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "npx",
      "args": [
        "-y",
        "encode-toolkit"
      ]
    }
  }
}

PyPIencode-toolkitv0.3.0b5

Run

uvx encode-toolkit

MCP client config

{
  "mcpServers": {
    "encode-toolkit": {
      "command": "uvx",
      "args": [
        "encode-toolkit"
      ]
    }
  }
}