Odel
Cytoscape Desktop MCP

Cytoscape Desktop MCP

Local
@cytoscape6JavaBSD-3-ClauseUpdated 6 days ago

Drive a running Cytoscape Desktop to load, lay out, and style biological networks.

View on GitHub

Runs locally over stdio

This server isn't hosted — your MCP client launches it from a package registry. Use one of the commands below, or drop the config into your client (e.g. Claude Desktop).

MCP Bundlehttps://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb

Distributed as an MCP bundle (`https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb`) — download it and import the bundle in your MCP client.

npm@cytoscape/cytoscape-desktop-mcp-bridgev1.0.3

Run

npx -y @cytoscape/cytoscape-desktop-mcp-bridge

MCP client config

{
  "mcpServers": {
    "cytoscape-desktop-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@cytoscape/cytoscape-desktop-mcp-bridge"
      ]
    }
  }
}