Odel

Biology & genomics MCP servers

A server here biology, genes, proteins or DNA analysis.

Not here: medicine for patients.

Biology & genomicsScientific computingEnvironment & climateAcademic papersWeatherEnergyEarth & ocean scienceAll of Science & research
223servers
145 remote78 localTagged by Odel's AI, which can make mistakes

Most popular in Biology & genomics

By GitHub stars, at most two per publisher
  1. Number 1: ToolUniverse@mims-harvard/tooluniverse2,700+ scientific tools for AI scientists: life science, research, literature, and more.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1,718 GitHub stars.
  2. Number 2: ChatSpatial@cafferychen777/chatspatialSchema-enforced spatial transcriptomics analysis with 20 tools and 65 methods via MCP4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.44 GitHub stars.
  3. Number 3: Galaxy@galaxyproject/galaxy-mcpMCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.39 GitHub stars.

Best fit

198 made for this, ranked by starsRemoteLocal
  1. ENCODE Toolkit @ammawla/encode-toolkit20 MCP tools + 48 skills for ENCODE Project genomics — search, download, pipelines4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.21 GitHub stars.
  2. BioMASS ODE Model Builder @marcorusc/biomassConstruct, inspect, visualize, and simulate evidence-backed ODE models with BioMASSNot assessed yet.Runs on your machine, installed from PyPI.19 GitHub stars.
  3. Opentargets @nickzren/opentargetsRead-only Open Targets: targets, diseases, drugs and evidence by name or ID. No API key needed.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.19 GitHub stars.
  4. MaBoSS Boolean Network Simulator @marcorusc/mabossMCP server for Boolean network simulation and attractor analysis using MaBoSS3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.19 GitHub stars.
  5. Rosetta @arielbs/rosetta-mcp-serverRosetta/PyRosetta protein modeling and Biotite translation for computational biology3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.19 GitHub stars.
  6. Atlas Scientific EZO Sensors @k-dense-ai/labmcp-atlas-ezoMCP server for Atlas Scientific EZO sensor circuits (pH, ORP, DO, EC, RTD, HUM, CO2, PRS) over UART.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.17 GitHub stars.
  7. Tecan Cavro Syringe Pump @k-dense-ai/labmcp-cavroMCP server for Tecan Cavro syringe pumps (XLP 6000, XMP 6000, XCalibur) over the DT protocol.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.17 GitHub stars.
  8. BioMCP-TS @yeyuan98/biomcp-tsBiomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.12 GitHub stars.
  9. PyEuropePMC @jonasheinickebio/pyeuropepmcSearch and analyse scientific literature across Europe PMC, PubMed, arXiv, and ClinicalTrials.gov3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.8 GitHub stars.
  10. Cytoscape Desktop MCP @cytoscape/cytoscape-desktop-mcp-bridgeDrive a running Cytoscape Desktop to load, lay out, and style biological networks.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from MCPB.7 GitHub stars.
  11. Plant Genomics @musharna/plant-genomics-mcpPlant genomics MCP — 56 tools across 23 backends with cross-source synthesis.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.7 GitHub stars.
  12. OpenHCS @openhcsdev/openhcsInspect, author, validate, and run high-content microscopy workflows.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.6 GitHub stars.
  13. Protein @cyanheads/protein-mcp-serverMCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.6 GitHub stars.
  14. AlphaFold Sovereign MCP @smaniches/alphafold-sovereign-mcpMCP server for AlphaFold and 8 other biomedical data sources with a local SQLite knowledge graph5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.4 GitHub stars.
  15. RCSB PDB @rcsb/rcsb-mcpMCP server to search, inspect, and cross-reference RCSB Protein Data Bank structures2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.4 GitHub stars.
  16. Data Aggregator @musharna/data-aggregator-mcpFind & fetch research datasets across 19 archives, omics registries, and literature sources.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.4 GitHub stars.
  17. Genomics MCP @rewire-bio/genomics-mcpBounded genomic data from archives and indexed files, with versioned reference evidence.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from Docker.3 GitHub stars.
  18. UniProt MCP @smaniches/uniprot-mcpVerifiable, release-aware protein evidence workflows over UniProt and linked scientific sources.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.3 GitHub stars.
  19. Preprint Fulltext @genecell/preprint-fulltextbioRxiv/medRxiv/arXiv preprint full text as structured sections for AI agents + search.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.2 GitHub stars.
  20. PIASO @genecell/piaso-mcpPIASO single-cell ecosystem docs (PIASO, COSG, cytome, LARIS, cytorete) + live PIASOmarkerDB3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.2 GitHub stars.
  21. Studydiff @nickjlamb/studydiffExplain why two scientific papers disagree, every claim grounded in a verbatim source quote.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.2 GitHub stars.

Also touches on Biology & genomics

9 where it is one part of a bigger job