- Rosetta @arielbs/rosetta-mcp-serverRosetta/PyRosetta protein modeling and Biotite translation for computational biology3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.19 GitHub stars.
- Sidereon @neilberkman/sidereonGNSS positioning and astrodynamics: orbit propagation, passes, GNSS solves, and RINEX QC4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from MCPB.18 GitHub stars.
- ChemDraw MCP (unofficial) @jurimaxam-dotcom/chemdraw-mcpMolecule names or SMILES to 2D structures, reactions, mechanisms, spectra - offline via RDKit.6% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.18 GitHub stars.
- Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion) @k-dense-ai/labmcp-ms-dataMCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.17 GitHub stars.
- Dense Evolution @tatopenn-cell/dense-evolutionReal quantum circuit simulator, VQE, molecular Hamiltonians, QM/MM forces, and MD via 21 tools.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.17 GitHub stars.
- SageMath @xbp-europe/sagemath-mcpStateful SageMath MCP server with 40 tools and a sandboxed Sage session per client.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.16 GitHub stars.
- Mathlas @archerkattri/mathlasAirtight math for AI agents: 3.68M-doc theorem search + numeric/Lean verification. No LLM, no key.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.13 GitHub stars.
- Prolog Reasoner @rikarazome/prolog-reasonerSWI-Prolog as a logic calculator for LLMs3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.12 GitHub stars.
- AgentSUMO @mw-jeong/agentsumo-mcpMCP server for LLM-driven SUMO traffic simulation, scenario design, and result analysis.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.11 GitHub stars.
- SCHISM Model Setup MCP Server @oceanmodeling/schism-mcpSCHISM model configuration debugging, parameter lookup, and validationNot assessed yet.Runs on your machine, installed from PyPI.9 GitHub stars.
- ADCIRC Model Setup MCP Server @oceanmodeling/adcirc-mcpADCIRC model configuration debugging, parameter lookup, and validationNot assessed yet.Runs on your machine, installed from PyPI.9 GitHub stars.
- VDatum MCP Server @mansurjisan/vdatum-mcpMCP server for vertical datum conversions using coastalmodeling-vdatum4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- AnkusDrive @gchen19/ankusdriveDrive FreeCAD from an agent: CAD modeling, drawings, FEM, CFD, EM, and multiphysics simulation.5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- Colab Exec @pdwi2020/mcp-server-colab-execExecute Python code on Google Colab GPU runtimes (T4/L4) from any MCP client9% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- Sounio Compiler @agourakis82/sounio-mcp-serverCheck, compile, run, and test Sounio programs locally.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- Motor Current Signature Analysis @lgdimaggio/mcp-server-mcsaMCP server for Motor Current Signature Analysis — fault detection in electric motors3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- MNE-MCP @exekiel179/mne-mcpMNE-Python neurophysiology analysis (EEG, MEG, sEEG, ECoG, fNIRS) via the Model Context Protocol4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.9 GitHub stars.
- Endiagram @dushyant30suthar/endiagram-mcpEN Diagram — structural verification for concurrent systems. Pure math, no AI.7% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.8 GitHub stars.
- genpark-jitter-buffer @alpha-park/genpark-jitter-bufferPacket ordering simulation and inter-arrival jitter telemetry.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from MCPB.7 GitHub stars.
- Mathematica @lars20070/mathematica-mcpMCP server for WolframScript5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.7 GitHub stars.
- Rftools @antonpogrebenko-public/rftools255 RF & electronics calculators + 13 simulation tools for AI agents.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.7 GitHub stars.
- PLAXIS @yixuanzhong/plaxis-mcpWindows-local MCP server for PLAXIS 2D Remote Scripting: geometry, staged construction, results.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.6 GitHub stars.
- OpenHCS @openhcsdev/openhcsInspect, author, validate, and run high-content microscopy workflows.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.6 GitHub stars.
- Kshana PNT-resilience simulator @ashfordeou/kshana-mcpRun the validated Kshana PNT-resilience simulator (orbits, frames, GNSS, fusion) from an AI agent.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from Docker.6 GitHub stars.
