- Neuro @aimplifier/neuro-mcpMCP for NeuroAgents assisting clinicians: MNE processing, EHR store, NeuroII visualization.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- SWATGenX @swatgenx/swatgenxSWAT+ watershed models for any river in the lower 48 states, with groundwater and PFAS data4% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; you sign in with your account.1 GitHub stars.
- Qnexus @blite-hq/qnexus-mcpMCP server for Quantinuum Nexus, wrapping the qnexus SDK. Not affiliated with Quantinuum.5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- VMD Hydrate @wjgoarxiv/vmd-hydrate-mcpDrive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Alphafold @pipeworx-io/alphafoldAlphaFold DB MCP — predicted protein structures.6% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.1 GitHub stars.
- ROOT MCP Server @omazapa/root-mcpROOT-based MCP server exposing root_python and root_cpp tools (stdio transport).5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from Docker.1 GitHub stars.
- SageMath @justice8096/sagemath-mcp-serverMCP server wrapping SageMath's full computer algebra system — 10 symbolic-math tools for LLMs.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.1 GitHub stars.
- Cruncher @islobodan/cruncher-mcpScientific calculator MCP server with 43 tools: arithmetic, trig, stats, unit conversion.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.1 GitHub stars.
- HEA-Bench @dfieser/hea-benchHigh-entropy alloy and oxide descriptors, phase rules, corpus, properties, and design tools.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Plutocalcdesigner @danpeig/plutocalcdesigner-mcpPlutocalc Designer is a software suite for water and wastewater treatment plants design4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from a package registry.1 GitHub stars.
- OEIS @daedalus/mcp-oeisMCP server for the OEIS (Online Encyclopedia of Integer Sequences) API2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Parigp @daedalus/mcp-parigpMCP server exposing cypari2 (PARI/GP) number theory library3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Discrete Structures @zohaibcodez/discrete-structuresComprehensive tools for discrete mathematics: logic, algorithms, number theory, cryptography4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Grounded Reasoning @alexaquarius/grounded-reasoningVerify multi-hop relational claims before an agent asserts them — zero tokens, with proof paths.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.1 GitHub stars.
- Hydrata - ANUGA Flood Simulation @hydrata/hydrata-mcp-serverRun ANUGA flood simulations, track progress, and retrieve results on Hydrata Cloud.4% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.1 GitHub stars.
- cloudHPC @cloudhpc/mcpRun FDS, OpenFOAM, CalculiX and other engineering simulations on cloudHPC from your AI assistant.6% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; you sign in with your account.
- Unicode Logic Kit @fvossel/unicode-logic-kitParse, check, prove and translate logic formulas: first-order, modal, description, higher-order.Not assessed yet.Runs on your machine, installed from PyPI.
- optlens @jjd-lab/optlensDebug and explain LP/MILP models: why infeasible, the smallest fix, what-if and sensitivity.Not assessed yet.Runs on your machine, installed from PyPI.
- BioHarbor @danielluo2/bioharborRun real bioinformatics from your AI agent. Reliable, reproducible, on your own GPUs.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
- Helionyx @jayzilva/helionyxSize hybrid solar PV, wind, battery, diesel and grid systems: hourly simulation, NPC ranking.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
- CarMaker @de-ioannidis/carmaker-mcpDrive IPG CarMaker for Simulink: run test runs, read results, edit vehicle data and parameters.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
- NHANES (design-correct survey analysis) @blackswancausallabs/nhanes-mcpDesign-correct NHANES analysis: survey weights, pooled cycles, CIs and NCHS reliability flags.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
- Isaac Sim robot workbench @milokucia/dex-isaac-mcpDrive a live Isaac Sim session: any robot, poses, gain tuning, range tests, Isaac Lab training.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
- Ajisai @masamoto1982/ajisaiExact rational and algebraic computation, with machine-readable Word contracts, in Ajisai.Not assessed yet.Runs on your machine, installed from npm.
