Scientific computing MCP servers

A server here theorem proving, symbolic maths, physics or engineering simulation.

Not here: business or finance calculators, trading backtests and simple arithmetic.

417servers
162 remote255 localTagged by Odel's AI, which can make mistakes

Best fit

280 made for this, ranked by starsRemoteLocal
  1. Groundline @fhs1220888/groundlineVerifiable test-data analysis: deterministic tools, evidence ledger, number-level checks.Not assessed yet.Runs on your machine, installed from PyPI.
  2. HYRR @exoma-ch/hyrrRadio-isotope production, activity and dose for charged-particle beams on stacked targetsNot assessed yet.Runs on your machine, installed from PyPI.
  3. AlphaFold @mrfentmen/alphafold-mcpKeyless MCP server for AlphaFold: protein structure predictions by UniProt accession, confidence...6% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  4. HelioSPICE @huangzesen/heliospiceSpacecraft ephemeris made easy — auto-managed SPICE kernels for heliophysics3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  5. Jarroba Tools · Calculation @invarato/jarroba-tools-calcMaths a model gets wrong: units with dimensional checking, equations, sheets. 5 tools, local.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  6. TensorCAD @filip-pajalic/tensorcadDesign transformer LLM architectures and report their parameters, FLOPs, memory and cost3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  7. OpenMEP duct sizing @samarmstrong/openmepDeterministic HVAC duct sizing at a fixed or Manual D friction rate; grades existing ducts.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  8. AnnealBridge @thetsungying/annealbridgeOptimization middleware for AI agents: JSON problem in, verified and ranked solutions out.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  9. FlagQuantum MCP Server @flagquantum/flagquantum-mcp-serverBuild, compile, run and export FlagQuantum circuits locally. No credentials or outbound network.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  10. Rupa3D @tiranyx/rupa3dChecks GLB assets against a spec without Blender and embeds the measured proof inside the GLB.5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  11. AgentFEM @haoming-luo/agentfemBuild, run, inspect, and verify finite-element simulations with AgentFEM.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  12. Weather for Grown Ups @janhelcl/weather-for-grown-upsOperational NWP, ensembles, AI weather models, regional forecasts, history, and verification.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  13. Saturday Materials @toki0413/saturday-materialsMaterials computing tools for AI agents: structures, engines, phonons, EOS, NEB, sampling, lineage.4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  14. DAG Studio WebMCP @black-swan-causal-labs/dag-studio-webmcpRead and edit a live DAG Studio canvas through its predefined WebMCP tools.8% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; it needs your API key.
  15. MDEngine @forcefieldsilicon/mdengineMD workbench for agents: 13 analysis tools, renders, hosted GPU runs; LAMMPS + OpenMM.6% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.
  16. nomue Record Verifier @licklider-ai/nomue-verifier-mcpLocal verification of nomue Protocol Records; current release supports the Release 1 Welch bundle.5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  17. Clairwave @clairwave/clairwaveOcean acoustics: propagation models, bathymetry, sound speed, vessel noise, live AIS. Open.2% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.
  18. nomue Record Verifier @licklider-ai/nomue-mcpLocal verification of nomue Protocol Records; current release supports the Release 1 Welch bundle.5% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  19. Project Bourne @kozakhou/project-bourneRun reproducible scientific workloads on GPUs, local compute, Slurm, and PBS with provenance.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  20. Qiao-MCP — Bridge Engineering (桥梁工程) @soratayang/qiao-mcpFull-lifecycle bridge structural analysis — modeling, staging, code checks.2% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  21. MasteryTrace @rudrendupaul/masterytraceWraps the MasteryTrace CLI as a single generic MCP tool for skill-mastery tracking.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.
  22. DiffBeam Gaussian Beam Optics @gaussian-beam/diffbeamRead-only optical catalog search plus DiffBeam server, schema, and catalog revision metadata.6% chance this is malicious. Assessed by AI, which can make mistakes.A remote server; no sign-in.
  23. Stata MCP Server @aliveranme/stata-mcp通过 pystata 驱动真实 Stata 的 MCP 服务器:数据加载/清洗/建模/诊断/图形导出,75 个工具覆盖完整计量工作流。4% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from npm.
  24. breedsim-mcp @musharna/breedsim-mcpBreeding-scheme simulation via AlphaSimR. Needs R, AlphaSimR and libtirpc-dev on the host.3% chance this is malicious. Assessed by AI, which can make mistakes.Runs on your machine, installed from PyPI.